A C D E F G H I J L M N O P R S T V W

A

add(int, int, double) - Method in class com.pawjaw.linalg.MatrixBuilder
 
add(double[]) - Method in class com.pawjaw.utils.SortedPairs
 
allocate() - Method in class com.pawjaw.linalg.Matrix
 
applyTfIdf() - Method in class com.pawjaw.linalg.Matrix
 
arg - Variable in class com.pawjaw.utils.OptArg
 
argOrDefault() - Method in class com.pawjaw.utils.OptArg
 
asDoubles(int[]) - Static method in class com.pawjaw.linalg.Matrix
 
avglls - Variable in class com.pawjaw.topics.CGLDA
 
avglls - Variable in class com.pawjaw.topics.CVHDP
 

C

CGLDA - Class in com.pawjaw.topics
 
CGLDA(Matrix, int, ProgressCallback) - Constructor for class com.pawjaw.topics.CGLDA
 
CGLDA(Matrix, Matrix, int, double, double, int, int, int, int, ProgressCallback) - Constructor for class com.pawjaw.topics.CGLDA
 
CGLDA(Matrix, int, double, double, int, int, int, ProgressCallback) - Constructor for class com.pawjaw.topics.CGLDA
 
CGLDA(Matrix, Matrix, int, double, double[][], int, int, int, int, ProgressCallback) - Constructor for class com.pawjaw.topics.CGLDA
 
CGLDA(Matrix, int, double, double[][], int, int, int, ProgressCallback) - Constructor for class com.pawjaw.topics.CGLDA
 
cols - Variable in class com.pawjaw.linalg.Matrix
 
columnInnerProduct(int, int, double) - Method in class com.pawjaw.linalg.Matrix
 
columnInnerProductSum(int[], double) - Method in class com.pawjaw.linalg.Matrix
 
columnOuterProduct(double) - Method in class com.pawjaw.linalg.Matrix
 
com.pawjaw.linalg - package com.pawjaw.linalg
 
com.pawjaw.math - package com.pawjaw.math
 
com.pawjaw.topics - package com.pawjaw.topics
 
com.pawjaw.utils - package com.pawjaw.utils
 
combineColumns(List<Matrix>) - Static method in class com.pawjaw.linalg.Matrix
 
CVHDP - Class in com.pawjaw.topics
 
CVHDP(Matrix, int, ProgressCallback) - Constructor for class com.pawjaw.topics.CVHDP
 
CVHDP(Matrix, Matrix, int, int, int, boolean, int, ProgressCallback) - Constructor for class com.pawjaw.topics.CVHDP
 
CVHDP(Matrix, Matrix, int, int, int, boolean, int, double, double, double, double, double, double, double, double, double, ProgressCallback) - Constructor for class com.pawjaw.topics.CVHDP
 

D

data - Variable in class com.pawjaw.utils.OptArg
 
DEFAULT_A_ALPHA - Static variable in class com.pawjaw.topics.CVHDP
 
DEFAULT_A_BETA - Static variable in class com.pawjaw.topics.CVHDP
 
DEFAULT_A_GAMMA - Static variable in class com.pawjaw.topics.CVHDP
 
DEFAULT_A_TAU - Static variable in class com.pawjaw.topics.CVHDP
 
DEFAULT_ALPHASUM - Static variable in class com.pawjaw.topics.CGLDA
 
DEFAULT_B_ALPHA - Static variable in class com.pawjaw.topics.CVHDP
 
DEFAULT_B_BETA - Static variable in class com.pawjaw.topics.CVHDP
 
DEFAULT_B_GAMMA - Static variable in class com.pawjaw.topics.CVHDP
 
DEFAULT_BETA - Static variable in class com.pawjaw.topics.CGLDA
 
DEFAULT_BURNIN - Static variable in class com.pawjaw.topics.CGLDA
 
DEFAULT_E_BETA - Static variable in class com.pawjaw.topics.CVHDP
 
DEFAULT_G_BETA - Static variable in class com.pawjaw.topics.CVHDP
 
DEFAULT_GROUP_TOKENS_BY_WORD - Static variable in class com.pawjaw.topics.CVHDP
 
DEFAULT_SAMPLEFREQ - Static variable in class com.pawjaw.topics.CGLDA
 
DEFAULT_SAMPLES - Static variable in class com.pawjaw.topics.CGLDA
 
default_value - Variable in class com.pawjaw.utils.OptArg
 
DEFAULT_VARIATIONAL_ITERATIONS - Static variable in class com.pawjaw.topics.CVHDP
 
description - Variable in enum com.pawjaw.utils.OptArg.OptType
 
digamma(double) - Static method in class com.pawjaw.math.SpecFun
 
digammaInv(double) - Static method in class com.pawjaw.math.SpecFun
 
dirichletAlphas(double[][]) - Static method in class com.pawjaw.math.SpecFun
 
dk_k - Variable in class com.pawjaw.topics.CGLDA
 
dk_k - Variable in class com.pawjaw.topics.CVHDP
 

E

E_alpha - Variable in class com.pawjaw.topics.CVHDP
 
E_beta - Variable in class com.pawjaw.topics.CVHDP
 
E_gamma - Variable in class com.pawjaw.topics.CVHDP
 
E_n_k - Variable in class com.pawjaw.topics.CVHDP
 
E_n_ks - Variable in class com.pawjaw.topics.CVHDP
 
E_pi_k - Variable in class com.pawjaw.topics.CVHDP
 
E_tau_w - Variable in class com.pawjaw.topics.CVHDP
 

F

first() - Method in class com.pawjaw.utils.SortedPairs
 

G

G_alpha - Variable in class com.pawjaw.topics.CVHDP
 
G_beta - Variable in class com.pawjaw.topics.CVHDP
 
G_pi_k - Variable in class com.pawjaw.topics.CVHDP
 
G_tau_w - Variable in class com.pawjaw.topics.CVHDP
 
get(int) - Method in class com.pawjaw.utils.SortedPairs
 
getColumns(int[]) - Method in class com.pawjaw.linalg.Matrix
 
getFileToRead() - Method in class com.pawjaw.utils.OptArg
 
getFileToWrite() - Method in class com.pawjaw.utils.OptArg
 
getLowerTriangular(double[][]) - Static method in class com.pawjaw.linalg.Matrix
 
getLowerTriangularColumnMajor(double[][]) - Static method in class com.pawjaw.linalg.Matrix
 
getNonZeroColumns() - Method in class com.pawjaw.linalg.Matrix
 

H

hasNext() - Method in class com.pawjaw.utils.SortedPairs
 
help - Variable in class com.pawjaw.utils.OptArg
 
holdOutFromEachColumn(double) - Method in class com.pawjaw.linalg.Matrix
 

I

identifyNonZeroColumns() - Method in class com.pawjaw.linalg.Matrix
 
increment(int) - Method in class com.pawjaw.utils.SortedPairs
 
iterator() - Method in class com.pawjaw.utils.SortedPairs
 

J

jensenShannonDivergence(int, int) - Method in class com.pawjaw.linalg.Matrix
 

L

label() - Method in class com.pawjaw.utils.OptArg
 
last() - Method in class com.pawjaw.utils.SortedPairs
 
lnfactorial(long) - Static method in class com.pawjaw.math.SpecFun
 
lngamma(double) - Static method in class com.pawjaw.math.SpecFun
 
long_opt - Variable in class com.pawjaw.utils.OptArg
 
longHelp() - Method in class com.pawjaw.utils.OptArg
 

M

main(String[]) - Static method in class com.pawjaw.linalg.Matrix
 
Main - Class in com.pawjaw.topics
 
Main(String[]) - Constructor for class com.pawjaw.topics.Main
 
main(String[]) - Static method in class com.pawjaw.topics.Main
 
Matrix - Class in com.pawjaw.linalg
 
Matrix() - Constructor for class com.pawjaw.linalg.Matrix
 
Matrix(double[][]) - Constructor for class com.pawjaw.linalg.Matrix
 
Matrix(DataInputStream) - Constructor for class com.pawjaw.linalg.Matrix
 
Matrix(BufferedReader) - Constructor for class com.pawjaw.linalg.Matrix
 
Matrix(double[][], boolean) - Constructor for class com.pawjaw.linalg.Matrix
 
MatrixBuilder - Class in com.pawjaw.linalg
 
MatrixBuilder(int, int) - Constructor for class com.pawjaw.linalg.MatrixBuilder
 
multiply(Matrix) - Method in class com.pawjaw.linalg.Matrix
 

N

n_k - Variable in class com.pawjaw.topics.CGLDA
 
n_ks - Variable in class com.pawjaw.topics.CGLDA
 
next() - Method in class com.pawjaw.utils.SortedPairs
 
normalizeColumns(double) - Method in class com.pawjaw.linalg.Matrix
 
notify(int, int) - Method in interface com.pawjaw.utils.ProgressCallback
 

O

opt_type - Variable in class com.pawjaw.utils.OptArg
 
OptArg - Class in com.pawjaw.utils
 
OptArg(int, OptArg.OptType, String, String, Object, String) - Constructor for class com.pawjaw.utils.OptArg
 
OptArg(int, OptArg.OptType, String, String, Object, String, Object[]) - Constructor for class com.pawjaw.utils.OptArg
 
optarg - Variable in exception com.pawjaw.utils.OptArgException
 
OptArg.OptType - Enum in com.pawjaw.utils
 
optarg_flag - Static variable in class com.pawjaw.utils.OptArg
 
OptArgException - Exception in com.pawjaw.utils
 
OptArgException(String) - Constructor for exception com.pawjaw.utils.OptArgException
 
OptArgException(String, OptArg) - Constructor for exception com.pawjaw.utils.OptArgException
 
optargs_applies - Static variable in class com.pawjaw.utils.OptArg
 

P

parse(String) - Method in enum com.pawjaw.utils.OptArg.OptType
 
parseArgs(String[]) - Static method in class com.pawjaw.utils.OptArg
 
phi_kw - Variable in class com.pawjaw.topics.CGLDA
 
phi_kw - Variable in class com.pawjaw.topics.CVHDP
 
pointr - Variable in class com.pawjaw.linalg.Matrix
 
ProgressCallback - Interface in com.pawjaw.utils
 

R

range(int, int, int) - Static method in class com.pawjaw.linalg.Matrix
 
read(BufferedReader) - Static method in class com.pawjaw.linalg.Matrix
 
real_bookkeeping_millis - Variable in class com.pawjaw.topics.CVHDP
 
real_burnin_millis - Variable in class com.pawjaw.topics.CGLDA
 
real_estimates_millis - Variable in class com.pawjaw.topics.CGLDA
 
real_hyperparameter_update_millis - Variable in class com.pawjaw.topics.CVHDP
 
real_variational_posterior_update_millis - Variable in class com.pawjaw.topics.CVHDP
 
remove() - Method in class com.pawjaw.utils.SortedPairs
 
reset() - Method in class com.pawjaw.utils.SortedPairs
 
rowind - Variable in class com.pawjaw.linalg.Matrix
 
rows - Variable in class com.pawjaw.linalg.Matrix
 

S

selectRowsByNIdf(double, double) - Method in class com.pawjaw.linalg.Matrix
 
set(int, int, double) - Method in class com.pawjaw.linalg.MatrixBuilder
 
short_opt - Variable in class com.pawjaw.utils.OptArg
 
size() - Method in class com.pawjaw.utils.SortedPairs
 
sortAscending() - Method in class com.pawjaw.utils.SortedPairs
 
sortDescending() - Method in class com.pawjaw.utils.SortedPairs
 
SortedPairs - Class in com.pawjaw.utils
 
SortedPairs(int) - Constructor for class com.pawjaw.utils.SortedPairs
 
SpecFun - Class in com.pawjaw.math
 
SpecFun() - Constructor for class com.pawjaw.math.SpecFun
 

T

tetragamma(double) - Static method in class com.pawjaw.math.SpecFun
 
theta_dk - Variable in class com.pawjaw.topics.CGLDA
 
theta_dk - Variable in class com.pawjaw.topics.CVHDP
 
timing - Variable in class com.pawjaw.topics.CGLDA
 
timing - Variable in class com.pawjaw.topics.CVHDP
 
toArray() - Method in class com.pawjaw.linalg.Matrix
 
toArray(Collection<Integer>) - Static method in class com.pawjaw.linalg.Matrix
 
toArray(Collection<Double>) - Static method in class com.pawjaw.linalg.Matrix
 
toColumnMajor() - Method in class com.pawjaw.linalg.Matrix
 
toColumnMajor(double[][]) - Static method in class com.pawjaw.linalg.Matrix
 
toCopy() - Method in class com.pawjaw.linalg.Matrix
 
toList(int[]) - Static method in class com.pawjaw.linalg.Matrix
 
toList(double[]) - Static method in class com.pawjaw.linalg.Matrix
 
toMatrix(Matrix) - Method in class com.pawjaw.linalg.MatrixBuilder
 
toMatrix() - Method in class com.pawjaw.linalg.MatrixBuilder
 
toString() - Method in class com.pawjaw.linalg.Matrix
 
toString() - Method in class com.pawjaw.utils.OptArg
 
toSummary() - Method in class com.pawjaw.linalg.Matrix
 
toSummary() - Method in class com.pawjaw.linalg.MatrixBuilder
 
toTranspose() - Method in class com.pawjaw.linalg.Matrix
 
trigamma(double) - Static method in class com.pawjaw.math.SpecFun
 

V

vals - Variable in class com.pawjaw.linalg.Matrix
 
value - Variable in class com.pawjaw.linalg.Matrix
 
value_idxpair - Variable in class com.pawjaw.linalg.MatrixBuilder
 
valueOf(String) - Static method in enum com.pawjaw.utils.OptArg.OptType
Returns the enum constant of this type with the specified name.
values() - Static method in enum com.pawjaw.utils.OptArg.OptType
Returns an array containing the constants of this enum type, in the order they are declared.

W

write(DataOutputStream) - Method in class com.pawjaw.linalg.Matrix
 
write(PrintWriter) - Method in class com.pawjaw.linalg.Matrix
 
write(double[][], PrintWriter) - Static method in class com.pawjaw.linalg.Matrix
 

A C D E F G H I J L M N O P R S T V W