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A
add(int, int, double)
- Method in class com.pawjaw.linalg.
MatrixBuilder
add(double[])
- Method in class com.pawjaw.utils.
SortedPairs
allocate()
- Method in class com.pawjaw.linalg.
Matrix
applyTfIdf()
- Method in class com.pawjaw.linalg.
Matrix
arg
- Variable in class com.pawjaw.utils.
OptArg
argOrDefault()
- Method in class com.pawjaw.utils.
OptArg
asDoubles(int[])
- Static method in class com.pawjaw.linalg.
Matrix
avglls
- Variable in class com.pawjaw.topics.
CGLDA
avglls
- Variable in class com.pawjaw.topics.
CVHDP
C
CGLDA
- Class in
com.pawjaw.topics
CGLDA(Matrix, int, ProgressCallback)
- Constructor for class com.pawjaw.topics.
CGLDA
CGLDA(Matrix, Matrix, int, double, double, int, int, int, int, ProgressCallback)
- Constructor for class com.pawjaw.topics.
CGLDA
CGLDA(Matrix, int, double, double, int, int, int, ProgressCallback)
- Constructor for class com.pawjaw.topics.
CGLDA
CGLDA(Matrix, Matrix, int, double, double[][], int, int, int, int, ProgressCallback)
- Constructor for class com.pawjaw.topics.
CGLDA
CGLDA(Matrix, int, double, double[][], int, int, int, ProgressCallback)
- Constructor for class com.pawjaw.topics.
CGLDA
cols
- Variable in class com.pawjaw.linalg.
Matrix
columnInnerProduct(int, int, double)
- Method in class com.pawjaw.linalg.
Matrix
columnInnerProductSum(int[], double)
- Method in class com.pawjaw.linalg.
Matrix
columnOuterProduct(double)
- Method in class com.pawjaw.linalg.
Matrix
com.pawjaw.linalg
- package com.pawjaw.linalg
com.pawjaw.math
- package com.pawjaw.math
com.pawjaw.topics
- package com.pawjaw.topics
com.pawjaw.utils
- package com.pawjaw.utils
combineColumns(List<Matrix>)
- Static method in class com.pawjaw.linalg.
Matrix
CVHDP
- Class in
com.pawjaw.topics
CVHDP(Matrix, int, ProgressCallback)
- Constructor for class com.pawjaw.topics.
CVHDP
CVHDP(Matrix, Matrix, int, int, int, boolean, int, ProgressCallback)
- Constructor for class com.pawjaw.topics.
CVHDP
CVHDP(Matrix, Matrix, int, int, int, boolean, int, double, double, double, double, double, double, double, double, double, ProgressCallback)
- Constructor for class com.pawjaw.topics.
CVHDP
D
data
- Variable in class com.pawjaw.utils.
OptArg
DEFAULT_A_ALPHA
- Static variable in class com.pawjaw.topics.
CVHDP
DEFAULT_A_BETA
- Static variable in class com.pawjaw.topics.
CVHDP
DEFAULT_A_GAMMA
- Static variable in class com.pawjaw.topics.
CVHDP
DEFAULT_A_TAU
- Static variable in class com.pawjaw.topics.
CVHDP
DEFAULT_ALPHASUM
- Static variable in class com.pawjaw.topics.
CGLDA
DEFAULT_B_ALPHA
- Static variable in class com.pawjaw.topics.
CVHDP
DEFAULT_B_BETA
- Static variable in class com.pawjaw.topics.
CVHDP
DEFAULT_B_GAMMA
- Static variable in class com.pawjaw.topics.
CVHDP
DEFAULT_BETA
- Static variable in class com.pawjaw.topics.
CGLDA
DEFAULT_BURNIN
- Static variable in class com.pawjaw.topics.
CGLDA
DEFAULT_E_BETA
- Static variable in class com.pawjaw.topics.
CVHDP
DEFAULT_G_BETA
- Static variable in class com.pawjaw.topics.
CVHDP
DEFAULT_GROUP_TOKENS_BY_WORD
- Static variable in class com.pawjaw.topics.
CVHDP
DEFAULT_SAMPLEFREQ
- Static variable in class com.pawjaw.topics.
CGLDA
DEFAULT_SAMPLES
- Static variable in class com.pawjaw.topics.
CGLDA
default_value
- Variable in class com.pawjaw.utils.
OptArg
DEFAULT_VARIATIONAL_ITERATIONS
- Static variable in class com.pawjaw.topics.
CVHDP
description
- Variable in enum com.pawjaw.utils.
OptArg.OptType
digamma(double)
- Static method in class com.pawjaw.math.
SpecFun
digammaInv(double)
- Static method in class com.pawjaw.math.
SpecFun
dirichletAlphas(double[][])
- Static method in class com.pawjaw.math.
SpecFun
dk_k
- Variable in class com.pawjaw.topics.
CGLDA
dk_k
- Variable in class com.pawjaw.topics.
CVHDP
E
E_alpha
- Variable in class com.pawjaw.topics.
CVHDP
E_beta
- Variable in class com.pawjaw.topics.
CVHDP
E_gamma
- Variable in class com.pawjaw.topics.
CVHDP
E_n_k
- Variable in class com.pawjaw.topics.
CVHDP
E_n_ks
- Variable in class com.pawjaw.topics.
CVHDP
E_pi_k
- Variable in class com.pawjaw.topics.
CVHDP
E_tau_w
- Variable in class com.pawjaw.topics.
CVHDP
F
first()
- Method in class com.pawjaw.utils.
SortedPairs
G
G_alpha
- Variable in class com.pawjaw.topics.
CVHDP
G_beta
- Variable in class com.pawjaw.topics.
CVHDP
G_pi_k
- Variable in class com.pawjaw.topics.
CVHDP
G_tau_w
- Variable in class com.pawjaw.topics.
CVHDP
get(int)
- Method in class com.pawjaw.utils.
SortedPairs
getColumns(int[])
- Method in class com.pawjaw.linalg.
Matrix
getFileToRead()
- Method in class com.pawjaw.utils.
OptArg
getFileToWrite()
- Method in class com.pawjaw.utils.
OptArg
getLowerTriangular(double[][])
- Static method in class com.pawjaw.linalg.
Matrix
getLowerTriangularColumnMajor(double[][])
- Static method in class com.pawjaw.linalg.
Matrix
getNonZeroColumns()
- Method in class com.pawjaw.linalg.
Matrix
H
hasNext()
- Method in class com.pawjaw.utils.
SortedPairs
help
- Variable in class com.pawjaw.utils.
OptArg
holdOutFromEachColumn(double)
- Method in class com.pawjaw.linalg.
Matrix
I
identifyNonZeroColumns()
- Method in class com.pawjaw.linalg.
Matrix
increment(int)
- Method in class com.pawjaw.utils.
SortedPairs
iterator()
- Method in class com.pawjaw.utils.
SortedPairs
J
jensenShannonDivergence(int, int)
- Method in class com.pawjaw.linalg.
Matrix
L
label()
- Method in class com.pawjaw.utils.
OptArg
last()
- Method in class com.pawjaw.utils.
SortedPairs
lnfactorial(long)
- Static method in class com.pawjaw.math.
SpecFun
lngamma(double)
- Static method in class com.pawjaw.math.
SpecFun
long_opt
- Variable in class com.pawjaw.utils.
OptArg
longHelp()
- Method in class com.pawjaw.utils.
OptArg
M
main(String[])
- Static method in class com.pawjaw.linalg.
Matrix
Main
- Class in
com.pawjaw.topics
Main(String[])
- Constructor for class com.pawjaw.topics.
Main
main(String[])
- Static method in class com.pawjaw.topics.
Main
Matrix
- Class in
com.pawjaw.linalg
Matrix()
- Constructor for class com.pawjaw.linalg.
Matrix
Matrix(double[][])
- Constructor for class com.pawjaw.linalg.
Matrix
Matrix(DataInputStream)
- Constructor for class com.pawjaw.linalg.
Matrix
Matrix(BufferedReader)
- Constructor for class com.pawjaw.linalg.
Matrix
Matrix(double[][], boolean)
- Constructor for class com.pawjaw.linalg.
Matrix
MatrixBuilder
- Class in
com.pawjaw.linalg
MatrixBuilder(int, int)
- Constructor for class com.pawjaw.linalg.
MatrixBuilder
multiply(Matrix)
- Method in class com.pawjaw.linalg.
Matrix
N
n_k
- Variable in class com.pawjaw.topics.
CGLDA
n_ks
- Variable in class com.pawjaw.topics.
CGLDA
next()
- Method in class com.pawjaw.utils.
SortedPairs
normalizeColumns(double)
- Method in class com.pawjaw.linalg.
Matrix
notify(int, int)
- Method in interface com.pawjaw.utils.
ProgressCallback
O
opt_type
- Variable in class com.pawjaw.utils.
OptArg
OptArg
- Class in
com.pawjaw.utils
OptArg(int, OptArg.OptType, String, String, Object, String)
- Constructor for class com.pawjaw.utils.
OptArg
OptArg(int, OptArg.OptType, String, String, Object, String, Object[])
- Constructor for class com.pawjaw.utils.
OptArg
optarg
- Variable in exception com.pawjaw.utils.
OptArgException
OptArg.OptType
- Enum in
com.pawjaw.utils
optarg_flag
- Static variable in class com.pawjaw.utils.
OptArg
OptArgException
- Exception in
com.pawjaw.utils
OptArgException(String)
- Constructor for exception com.pawjaw.utils.
OptArgException
OptArgException(String, OptArg)
- Constructor for exception com.pawjaw.utils.
OptArgException
optargs_applies
- Static variable in class com.pawjaw.utils.
OptArg
P
parse(String)
- Method in enum com.pawjaw.utils.
OptArg.OptType
parseArgs(String[])
- Static method in class com.pawjaw.utils.
OptArg
phi_kw
- Variable in class com.pawjaw.topics.
CGLDA
phi_kw
- Variable in class com.pawjaw.topics.
CVHDP
pointr
- Variable in class com.pawjaw.linalg.
Matrix
ProgressCallback
- Interface in
com.pawjaw.utils
R
range(int, int, int)
- Static method in class com.pawjaw.linalg.
Matrix
read(BufferedReader)
- Static method in class com.pawjaw.linalg.
Matrix
real_bookkeeping_millis
- Variable in class com.pawjaw.topics.
CVHDP
real_burnin_millis
- Variable in class com.pawjaw.topics.
CGLDA
real_estimates_millis
- Variable in class com.pawjaw.topics.
CGLDA
real_hyperparameter_update_millis
- Variable in class com.pawjaw.topics.
CVHDP
real_variational_posterior_update_millis
- Variable in class com.pawjaw.topics.
CVHDP
remove()
- Method in class com.pawjaw.utils.
SortedPairs
reset()
- Method in class com.pawjaw.utils.
SortedPairs
rowind
- Variable in class com.pawjaw.linalg.
Matrix
rows
- Variable in class com.pawjaw.linalg.
Matrix
S
selectRowsByNIdf(double, double)
- Method in class com.pawjaw.linalg.
Matrix
set(int, int, double)
- Method in class com.pawjaw.linalg.
MatrixBuilder
short_opt
- Variable in class com.pawjaw.utils.
OptArg
size()
- Method in class com.pawjaw.utils.
SortedPairs
sortAscending()
- Method in class com.pawjaw.utils.
SortedPairs
sortDescending()
- Method in class com.pawjaw.utils.
SortedPairs
SortedPairs
- Class in
com.pawjaw.utils
SortedPairs(int)
- Constructor for class com.pawjaw.utils.
SortedPairs
SpecFun
- Class in
com.pawjaw.math
SpecFun()
- Constructor for class com.pawjaw.math.
SpecFun
T
tetragamma(double)
- Static method in class com.pawjaw.math.
SpecFun
theta_dk
- Variable in class com.pawjaw.topics.
CGLDA
theta_dk
- Variable in class com.pawjaw.topics.
CVHDP
timing
- Variable in class com.pawjaw.topics.
CGLDA
timing
- Variable in class com.pawjaw.topics.
CVHDP
toArray()
- Method in class com.pawjaw.linalg.
Matrix
toArray(Collection<Integer>)
- Static method in class com.pawjaw.linalg.
Matrix
toArray(Collection<Double>)
- Static method in class com.pawjaw.linalg.
Matrix
toColumnMajor()
- Method in class com.pawjaw.linalg.
Matrix
toColumnMajor(double[][])
- Static method in class com.pawjaw.linalg.
Matrix
toCopy()
- Method in class com.pawjaw.linalg.
Matrix
toList(int[])
- Static method in class com.pawjaw.linalg.
Matrix
toList(double[])
- Static method in class com.pawjaw.linalg.
Matrix
toMatrix(Matrix)
- Method in class com.pawjaw.linalg.
MatrixBuilder
toMatrix()
- Method in class com.pawjaw.linalg.
MatrixBuilder
toString()
- Method in class com.pawjaw.linalg.
Matrix
toString()
- Method in class com.pawjaw.utils.
OptArg
toSummary()
- Method in class com.pawjaw.linalg.
Matrix
toSummary()
- Method in class com.pawjaw.linalg.
MatrixBuilder
toTranspose()
- Method in class com.pawjaw.linalg.
Matrix
trigamma(double)
- Static method in class com.pawjaw.math.
SpecFun
V
vals
- Variable in class com.pawjaw.linalg.
Matrix
value
- Variable in class com.pawjaw.linalg.
Matrix
value_idxpair
- Variable in class com.pawjaw.linalg.
MatrixBuilder
valueOf(String)
- Static method in enum com.pawjaw.utils.
OptArg.OptType
Returns the enum constant of this type with the specified name.
values()
- Static method in enum com.pawjaw.utils.
OptArg.OptType
Returns an array containing the constants of this enum type, in the order they are declared.
W
write(DataOutputStream)
- Method in class com.pawjaw.linalg.
Matrix
write(PrintWriter)
- Method in class com.pawjaw.linalg.
Matrix
write(double[][], PrintWriter)
- Static method in class com.pawjaw.linalg.
Matrix
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